If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ), 'gf_id' => 'HOM05D000704', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000704' ), 'data_identifier' => 'HOM05D000704', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000704', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '815', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25270' => 'bna', 'A02p02350' => 'bna', 'A02p35000' => 'bna', 'A02p35010' => 'bna', 'A03p03810' => 'bna', 'A03p06440' => 'bna', 'A04p14020' => 'bna', 'A04p14030' => 'bna', 'A04p14040' => 'bna', 'A06p27800' => 'bna', 'A06p41520' => 'bna', 'A06p41530' => 'bna', 'A07p20610' => 'bna', 'A07p20620' => 'bna', 'A08p09170' => 'bna', 'A10p08260' => 'bna', 'A10p24310' => 'bna', 'Aa31LG1G18540' => 'aar', 'Aa31LG2G5550' => 'aar', 'Aa31LG3G18190' => 'aar', 'Aa31LG3G7020' => 'aar', 'Aa31LG4G17230' => 'aar', 'Aa31LG5G11060' => 'aar', 'Aa31LG9G730' => 'aar', 'Aa31LG9G740' => 'aar', 'Actinidia09638' => 'ach', 'Actinidia30870' => 'ach', 'Ah.02g114830' => 'amhyb', 'Ah.03g136020' => 'amhyb', 'AL3G10150' => 'aly', 'AL3G10160' => 'aly', 'AL5G16070' => 'aly', 'AL5G16080' => 'aly', 'AL5G28070' => 'aly', 'AL6G18840' => 'aly', 'AL6G24780' => 'aly', 'AL7G48570' => 'aly', 'AL7G48580' => 'aly', 'AL8G24820' => 'aly', 'AL8G40560' => 'aly', 'Aqoxy3G01579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.DSQC6N' => 'arhy', 'AT3G01940' => 'ath', 'AT3G01950' => 'ath', 'AT3G27027' => 'ath', 'AT3G27030' => 'ath', 'AT3G48660' => 'ath', 'AT5G08391' => 'ath', 'AT5G14110' => 'ath', 'AT5G40960' => 'ath', 'AT5G40980' => 'ath', 'AT5G50560' => 'ath', 'AT5G50660' => 'ath', 'AT5G63500' => 'ath', 'ATR0561G014' => 'atr', 'ATR0561G041' => 'atr', 'Atru.chr11.2345' => 'acertr', 'Atru.chr13.2201' => 'acertr', 'Atru.chr6.1816' => 'acertr', 'Atru.chr6.817' => 'acertr', 'Atru.chr9.1219' => 'acertr', 'AUR62003444' => 'cqu', 'AUR62003445' => 'cqu', 'AUR62003465' => 'cqu', 'AUR62005640' => 'cqu', 'AUR62005641' => 'cqu', 'AUR62029400' => 'cqu', 'AUR62029589' => 'cqu', 'AUR62034847' => 'cqu', 'BcaB01g00791' => 'bca', 'BcaB01g05307' => 'bca', 'BcaB01g05604' => 'bca', 'BcaB01g05608' => 'bca', 'BcaB02g07917' => 'bca', 'BcaB02g07918' => 'bca', 'BcaB02g07919' => 'bca', 'BcaB02g09756' => 'bca', 'BcaB02g10628' => 'bca', 'BcaB05g22998' => 'bca', 'BcaB06g27578' => 'bca', 'BcaB06g27581' => 'bca', 'BcaB06g27582' => 'bca', 'BcaB07g30192' => 'bca', 'BcaB07g30193' => 'bca', 'BcaB07g30194' => 'bca', 'BcaB08g35444' => 'bca', 'BcaB08g36962' => 'bca', 'BcaC01g02353' => 'bca', 'BcaC01g06928' => 'bca', 'BcaC02g08985' => 'bca', 'BcaC02g08986' => 'bca', 'BcaC02g08987' => 'bca', 'BcaC03g13226' => 'bca', 'BcaC03g13516' => 'bca', 'BcaC03g17418' => 'bca', 'BcaC03g17419' => 'bca', 'BcaC03g17420' => 'bca', 'BcaC04g20745' => 'bca', 'BcaC05g30435' => 'bca', 'BcaC05g30436' => 'bca', 'BcaC05g30437' => 'bca', 'BcaC05g30439' => 'bca', 'BcaC06g31023' => 'bca', 'BcaC06g31024' => 'bca', 'BcaC06g31025' => 'bca', 'BcaC06g33863' => 'bca', 'BcaC06g33864' => 'bca', 'BcaC06g33865' => 'bca', 'BcaC07g39348' => 'bca', 'BcaC08g44501' => 'bca', 'BcaC09g49891' => 'bca', 'BcaNung06020' => 'bca', 'BcaNung06021' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00150' => 'bna', 'BolC1t03096H' => 'bol', 'BolC2t06316H' => 'bol', 'BolC2t11436H' => 'bol', 'BolC2t11437H' => 'bol', 'BolC3t12962H' => 'bol', 'BolC3t13245H' => 'bol', 'BolC3t18548H' => 'bol', 'BolC3t18892H' => 'bol', 'BolC4t26397H' => 'bol', 'BolC4t26398H' => 'bol', 'BolC4t26399H' => 'bol', 'BolC6t37145H' => 'bol', 'BolC7t44128H' => 'bol', 'BolC7t44129H' => 'bol', 'BolC8t49996H' => 'bol', 'BolC9t56841H' => 'bol', 'BolC9t59137H' => 'bol', 'BraA01t02437Z' => 'bra', 'BraA02t04955Z' => 'bra', 'BraA02t08509Z' => 'bra', 'BraA02t08510Z' => 'bra', 'BraA03t09728Z' => 'bra', 'BraA03t09975Z' => 'bra', 'BraA04t17064Z' => 'bra', 'BraA04t17065Z' => 'bra', 'BraA04t17066Z' => 'bra', 'BraA06t24988Z' => 'bra', 'BraA06t25719Z' => 'bra', 'BraA06t25964Z' => 'bra', 'BraA06t27077Z' => 'bra', 'BraA06t27078Z' => 'bra', 'BraA07t29750Z' => 'bra', 'BraA07t29751Z' => 'bra', 'BraA10t44497Z' => 'bra', 'BraSC35t45974Z' => 'bra', 'BraSC76t46613Z' => 'bra', 'BraSC76t46614Z' => 'bra', 'C01p31640' => 'bna', 'C02p03580' => 'bna', 'C02p06570' => 'bna', 'C02p53680' => 'bna', 'C02p53690' => 'bna', 'C03p04290' => 'bna', 'C03p07430' => 'bna', 'C03p66200' => 'bna', 'C04p48050' => 'bna', 'C04p48060' => 'bna', 'C04p48070' => 'bna', 'C09p39630' => 'bna', 'C09p62990' => 'bna', 'C09p74880' => 'bna', 'C09p74890' => 'bna', 'CAN.G1232.1' => 'can', 'CAN.G1280.48' => 'can', 'CAN.G1280.49' => 'can', 'CAN.G1525.8' => 'can', 'CAN.G1525.9' => 'can', 'CAN.G1611.11' => 'can', 'CAN.G237.7' => 'can', 'CAN.G37.11' => 'can', 'CAN.G473.107' => 'can', 'CAN.G473.108' => 'can', 'CAN.G473.109' => 'can', 'CAN.G473.110' => 'can', 'CAN.G473.111' => 'can', 'CAN.G65.53' => 'can', 'CAN.G65.54' => 'can', 'CAN.G74.18' => 'can', 'CANSAT01G0493' => 'cansat', 'CANSAT01G1984' => 'cansat', 'CANSAT64G0174' => 'cansat', 'CANSAT64G0442' => 'cansat', 'CANSAT64G2006' => 'cansat', 'CANSAT64G2580' => 'cansat', 'CANSAT80G1111' => 'cansat', 'CANSAT80G2003' => 'cansat', 'CANSAT80G2030' => 'cansat', 'CANSAT80G2242' => 'cansat', 'CARHR075010' => 'chi', 'CARHR148240' => 'chi', 'CARHR148250' => 'chi', 'CARHR157410' => 'chi', 'CARHR199230' => 'chi', 'CARHR204660' => 'chi', 'CARHR213400' => 'chi', 'CARHR213410' => 'chi', 'CARHR213420' => 'chi', 'CARHR277350' => 'chi', 'CARHR288570' => 'chi', 'Carub.0003s0014' => 'cru', 'Carub.0003s0015' => 'cru', 'Carub.0005s0523' => 'cru', 'Carub.0005s0524' => 'cru', 'Carub.0005s1480' => 'cru', 'Carub.0006s0729' => 'cru', 'Carub.0006s1231' => 'cru', 'Carub.0007s3452' => 'cru', 'Carub.0007s3453' => 'cru', 'Carub.0007s3454' => 'cru', 'Carub.0008s1065' => 'cru', 'Carub.0008s2420' => 'cru', 'Cc07_g00930' => 'ccan', 'Cc07_g00950' => 'ccan', 'Cc07_g00960' => 'ccan', 'Cc11_g17070' => 'ccan', 'Cc11_g17080' => 'ccan', 'Cfa007216' => 'cfa', 'Cfa007217' => 'cfa', 'Cfa007218' => 'cfa', 'Ciclev10017392m.g' => 'ccl', 'Ciclev10017396m.g' => 'ccl', 'Ciclev10017398m.g' => 'ccl', 'Ciclev10017400m.g' => 'ccl', 'Ciclev10017402m.g' => 'ccl', 'Ciclev10018377m.g' => 'ccl', 'Ciclev10033156m.g' => 'ccl', 'Ciclev10033268m.g' => 'ccl', 'Ciclev10033318m.g' => 'ccl', 'Ciclev10033493m.g' => 'ccl', 'CiPaw.03G056500' => 'cil', 'CiPaw.03G056600' => 'cil', 'CiPaw.03G056700' => 'cil', 'CiPaw.03G056800' => 'cil', 'CiPaw.03G056900' => 'cil', 'CiPaw.04G037200' => 'cil', 'CiPaw.04G037300' => 'cil', 'CiPaw.04G037400' => 'cil', 'CiPaw.04G037500' => 'cil', 'CiPaw.05G107900' => 'cil', 'CiPaw.06G104200' => 'cil', 'CiPaw.06G104300' => 'cil', 'CiPaw.11G005900' => 'cil', 'CiPaw.12G044300' => 'cil', 'ClCG06G002170' => 'cla', 'ClCG06G018000' => 'cla', 'ClCG11G009450' => 'cla', 'COL.COLO4_03540' => 'col', 'COL.COLO4_13270' => 'col', 'COL.COLO4_13271' => 'col', 'COL.COLO4_20426' => 'col', 'COL.COLO4_20427' => 'col', 'COL.COLO4_28147' => 'col', 'COL.COLO4_28151' => 'col', 'Cpa.g.sc13.96' => 'cpa', 'Cpa.g.sc13.97' => 'cpa', 'Cpa.g.sc171.3' => 'cpa', 'Cpa.g.sc171.4' => 'cpa', 'CsaV3_1G000470' => 'csa', 'CsaV3_2G034040' => 'csa', 'CsaV3_2G034050' => 'csa', 'CsaV3_4G003060' => 'csa', 'CsaV3_6G008240' => 'csa', 'CSS0006374' => 'camsi', 'CSS0013007' => 'camsi', 'CSS0015895' => 'camsi', 'CSS0020522' => 'camsi', 'CSS0021448' => 'camsi', 'CSS0024318' => 'camsi', 'CSS0026321' => 'camsi', 'CSS0027770' => 'camsi', 'CSS0028221' => 'camsi', 'CSS0035680' => 'camsi', 'CSS0035760' => 'camsi', 'CSS0040417' => 'camsi', 'CSS0044147' => 'camsi', 'CSS0045339' => 'camsi', 'DCAR_006998' => 'dca', 'DCAR_007499' => 'dca', 'DCAR_011323' => 'dca', 'DCAR_015108' => 'dca', 'DCAR_015109' => 'dca', 'DCAR_021797' => 'dca', 'DCAR_021798' => 'dca', 'DCAR_026453' => 'dca', 'Dinv33329' => 'din', 'Dinv33330' => 'din', 'Duzib068G0380' => 'dzi', 'Duzib068G0403' => 'dzi', 'Duzib084G0906' => 'dzi', 'Duzib147G0170' => 'dzi', 'Duzib147G0474' => 'dzi', 'Duzib147G0905' => 'dzi', 'Duzib187G0169' => 'dzi', 'Duzib187G0296' => 'dzi', 'Duzib187G1367' => 'dzi', 'Duzib187G1773' => 'dzi', 'Duzib205G0848' => 'dzi', 'Duzib205G1483' => 'dzi', 'Duzib251G0460' => 'dzi', 'Duzib264G0475' => 'dzi', 'Duzib264G1074' => 'dzi', 'Duzib268G0861' => 'dzi', 'Duzib268G1477' => 'dzi', 'ECA234G1842' => 'eca', 'EL10Ac1g01339' => 'bvu', 'EL10Ac5g11396' => 'bvu', 'EL10Ac6g13524' => 'bvu', 'EL10Ac6g15425' => 'bvu', 'Eucgr.B00099' => 'egr', 'Eucgr.B03509' => 'egr', 'Eucgr.B03510' => 'egr', 'Eucgr.H03346' => 'egr', 'Eucgr.H03347' => 'egr', 'Eucgr.H03348' => 'egr', 'Eucgr.H04621' => 'egr', 'Eucgr.H04622' => 'egr', 'Eucgr.I01637' => 'egr', 'Eucgr.I01638' => 'egr', 'Eucgr.I01639' => 'egr', 'Eucgr.I01640' => 'egr', 'Eucgr.L01505' => 'egr', 'FAN02G0276' => 'fan', 'FAN02G4143' => 'fan', 'FAN04G1486' => 'fan', 'FAN04G2006' => 'fan', 'FAN05G4317' => 'fan', 'FAN05G5140' => 'fan', 'FAN07G2561' => 'fan', 'FAN08G2434' => 'fan', 'FAN08G2995' => 'fan', 'FAN09G0020' => 'fan', 'FAN09G3174' => 'fan', 'FAN09G4297' => 'fan', 'FAN09G4474' => 'fan', 'FAN13G2192' => 'fan', 'FAN13G2624' => 'fan', 'FAN13G3276' => 'fan', 'FAN14G0183' => 'fan', 'FAN14G2196' => 'fan', 'FAN14G5354' => 'fan', 'FAN17G0294' => 'fan', 'FAN18G0824' => 'fan', 'FvH4_6g53720' => 'fve', 'FvH4_6g53740' => 'fve', 'Glyma.05G148400' => 'gma', 'Glyma.05G148500' => 'gma', 'Glyma.05G204400' => 'gma', 'Glyma.06G283700' => 'gma', 'Glyma.07G057100' => 'gma', 'Glyma.08G105300' => 'gma', 'Glyma.11G252000' => 'gma', 'Glyma.11G252100' => 'gma', 'Glyma.14G169000' => 'gma', 'Glyma.16G026100' => 'gma', 'Glyma.16G054800' => 'gma', 'Glyma.16G054900' => 'gma', 'Glyma.16G055000' => 'gma', 'Glyma.16G055100' => 'gma', 'Glyma.16G055200' => 'gma', 'Glyma.18G005000' => 'gma', 'Glyma.19G027000' => 'gma', 'Glyma.19G092700' => 'gma', 'Glyma.19G092800' => 'gma', 'Glyma.19G092900' => 'gma', 'Glyma.19G093100' => 'gma', 'Glyma.19G093300' => 'gma', 'Glyma.20G029400' => 'gma', 'Gohir.1Z049471' => 'ghi', 'Gohir.A03G053100' => 'ghi', 'Gohir.A03G125100' => 'ghi', 'Gohir.A04G129900' => 'ghi', 'Gohir.A04G140501' => 'ghi', 'Gohir.A05G337333' => 'ghi', 'Gohir.A05G337600' => 'ghi', 'Gohir.A05G337700' => 'ghi', 'Gohir.A07G050300' => 'ghi', 'Gohir.A07G229300' => 'ghi', 'Gohir.A07G229400' => 'ghi', 'Gohir.A07G229500' => 'ghi', 'Gohir.A07G229600' => 'ghi', 'Gohir.A07G229700' => 'ghi', 'Gohir.A09G036800' => 'ghi', 'Gohir.A09G037000' => 'ghi', 'Gohir.A09G037100' => 'ghi', 'Gohir.A10G073300' => 'ghi', 'Gohir.A11G036800' => 'ghi', 'Gohir.A11G036900' => 'ghi', 'Gohir.A12G060500' => 'ghi', 'Gohir.A12G149300' => 'ghi', 'Gohir.D02G147500' => 'ghi', 'Gohir.D03G114000' => 'ghi', 'Gohir.D04G076200' => 'ghi', 'Gohir.D04G076300' => 'ghi', 'Gohir.D04G183700' => 'ghi', 'Gohir.D04G184001' => 'ghi', 'Gohir.D07G054700' => 'ghi', 'Gohir.D07G236500' => 'ghi', 'Gohir.D07G236600' => 'ghi', 'Gohir.D07G236700' => 'ghi', 'Gohir.D07G236800' => 'ghi', 'Gohir.D07G236900' => 'ghi', 'Gohir.D09G038200' => 'ghi', 'Gohir.D09G038250' => 'ghi', 'Gohir.D10G077800' => 'ghi', 'Gohir.D11G040100' => 'ghi', 'Gohir.D11G040200' => 'ghi', 'Gohir.D12G153200' => 'ghi', 'Gorai.001G057900' => 'gra', 'Gorai.001G272500' => 'gra', 'Gorai.001G272600' => 'gra', 'Gorai.001G272700' => 'gra', 'Gorai.001G272800' => 'gra', 'Gorai.003G120300' => 'gra', 'Gorai.005G165200' => 'gra', 'Gorai.006G043700' => 'gra', 'Gorai.007G043200' => 'gra', 'Gorai.007G043300' => 'gra', 'Gorai.008G063700' => 'gra', 'Gorai.008G165700' => 'gra', 'Gorai.011G084300' => 'gra', 'Gorai.012G085700' => 'gra', 'Gorai.012G085900' => 'gra', 'Gorai.012G086000' => 'gra', 'Gorai.012G166400' => 'gra', 'Gorai.012G176700' => 'gra', 'Gorai.012G177100' => 'gra', 'GSVIVG01008561001' => 'vvi', 'GSVIVG01033068001' => 'vvi', 'GSVIVG01033069001' => 'vvi', 'GSVIVG01033073001' => 'vvi', 'GSVIVG01033074001' => 'vvi', 'HanXRQChr00c0029g0571171' => 'han', 'HanXRQChr05g0155111' => 'han', 'HanXRQChr07g0198171' => 'han', 'HanXRQChr07g0198181' => 'han', 'HanXRQChr08g0209631' => 'han', 'HanXRQChr08g0209701' => 'han', 'HanXRQChr09g0256251' => 'han', 'HanXRQChr12g0361311' => 'han', 'HanXRQChr12g0385651' => 'han', 'HanXRQChr14g0450581' => 'han', 'HanXRQChr14g0450591' => 'han', 'HanXRQChr14g0451211' => 'han', 'HanXRQChr15g0474851' => 'han', 'HanXRQChr15g0474861' => 'han', 'HanXRQChr17g0550031' => 'han', 'HanXRQChr17g0550041' => 'han', 'HanXRQChr17g0568991' => 'han', 'Haze_07155' => 'cav', 'Haze_12438' => 'cav', 'Haze_14887' => 'cav', 'Hma1.2p1_0014F.1_g009280' => 'hma', 'Hma1.2p1_0065F.1_g035240' => 'hma', 'Hma1.2p1_0065F.1_g035270' => 'hma', 'Hma1.2p1_0093F.1_g046890' => 'hma', 'Hma1.2p1_0525F.1_g172490' => 'hma', 'Hma1.2p1_0525F.1_g172500' => 'hma', 'Hma1.2p1_0525F.1_g172510' => 'hma', 'Hma1.2p1_1057F.1_g252740' => 'hma', 'Hma1.2p1_1057F.1_g252750' => 'hma', 'Hma1.2p1_1057F.1_g252760' => 'hma', 'HPP92_021570' => 'vpl', 'HPP92_024536' => 'vpl', 'HPP92_025262' => 'vpl', 'HPP92_025266' => 'vpl', 'HPP92_025272' => 'vpl', 'HPP92_025273' => 'vpl', 'Hund02103' => 'sun', 'Hund04281' => 'sun', 'Lalb_Chr00c01g0403661' => 'lal', 'Lalb_Chr00c01g0403671' => 'lal', 'Lalb_Chr00c01g0403691' => 'lal', 'Lalb_Chr07g0183501' => 'lal', 'Lalb_Chr07g0187051' => 'lal', 'Lalb_Chr08g0230561' => 'lal', 'Lalb_Chr12g0202251' => 'lal', 'Lalb_Chr13g0294551' => 'lal', 'Lalb_Chr22g0360321' => 'lal', 'Lalb_Chr22g0360331' => 'lal', 'Lalb_Chr24g0403281' => 'lal', 'Lalb_Chr24g0403291' => 'lal', 'Lj1g0003309' => 'lja', 'Lj1g0005242' => 'lja', 'Lj1g0011189' => 'lja', 'Lj1g0016959' => 'lja', 'Lj3g0007170' => 'lja', 'Lj4g0004577' => 'lja', 'Lj4g0010070' => 'lja', 'Lj4g0013820' => 'lja', 'Lj6g0007909' => 'lja', 'Lj6g0015423' => 'lja', 'Lsat_1_v5_gn_0_2501' => 'lsa', 'Lsat_1_v5_gn_0_2660' => 'lsa', 'Lsat_1_v5_gn_1_33061' => 'lsa', 'Lsat_1_v5_gn_2_93180' => 'lsa', 'Lsat_1_v5_gn_2_93220' => 'lsa', 'Lsat_1_v5_gn_2_93260' => 'lsa', 'Lsat_1_v5_gn_4_185000' => 'lsa', 'Lsat_1_v5_gn_4_720' => 'lsa', 'Lsat_1_v5_gn_5_11701' => 'lsa', 'Lsat_1_v5_gn_5_11820' => 'lsa', 'Manes.12G009400' => 'mes', 'Manes.12G009500' => 'mes', 'Manes.13G010100' => 'mes', 'Manes.14G050001' => 'mes', 'Manes.14G050101' => 'mes', 'Manes.15G162100' => 'mes', 'Manes.15G162200' => 'mes', 'Manes.15G162300' => 'mes', 'Manes.15G162400' => 'mes', 'Manes.17G102200' => 'mes', 'Manes.17G102466' => 'mes', 'Mapoly0032s0163' => 'mpo', 'Mapoly0039s0057' => 'mpo', 'MBI07_g11272_MAGBIO' => 'mbi', 'MBI11_g22681_MAGBIO' => 'mbi', 'MBI11_g22682_MAGBIO' => 'mbi', 'MD06G1140200' => 'mdo', 'MD06G1140400' => 'mdo', 'MD09G1009200' => 'mdo', 'MD09G1009300' => 'mdo', 'MD09G1009400' => 'mdo', 'MD09G1009500' => 'mdo', 'MD13G1121300' => 'mdo', 'MD14G1155600' => 'mdo', 'MD16G1121600' => 'mdo', 'MD17G1000900' => 'mdo', 'MD17G1001100' => 'mdo', 'MD17G1001200' => 'mdo', 'Medtr3g085020' => 'mtr', 'Medtr3g085030' => 'mtr', 'Medtr7g028815' => 'mtr', 'Medtr7g028870' => 'mtr', 'Medtr7g028940' => 'mtr', 'Medtr7g028945' => 'mtr', 'Medtr7g028975' => 'mtr', 'Medtr8g027820' => 'mtr', 'Medtr8g096840' => 'mtr', 'Medtr8g097020' => 'mtr', 'Medtr8g097030' => 'mtr', 'MELO3C008177.2' => 'cme', 'MELO3C008179.2' => 'cme', 'MELO3C017739.2' => 'cme', 'MELO3C017740.2' => 'cme', 'MELO3C022313.2' => 'cme', 'MELO3C026199.2' => 'cme', 'MELO3C029837.2' => 'cme', 'MELO3C035739.2' => 'cme', 'Migut.D01273' => 'egut', 'Migut.E00008' => 'egut', 'Migut.F00054' => 'egut', 'Migut.F00055' => 'egut', 'Migut.F00056' => 'egut', 'Migut.K01471' => 'egut', 'Migut.K01472' => 'egut', 'Migut.K01473' => 'egut', 'Nitab4.5_0000477g0010' => 'nta', 'Nitab4.5_0000559g0350' => 'nta', 'Nitab4.5_0000559g0380' => 'nta', 'Nitab4.5_0000854g0060' => 'nta', 'Nitab4.5_0001311g0200' => 'nta', 'Nitab4.5_0002050g0050' => 'nta', 'Nitab4.5_0003376g0070' => 'nta', 'Nitab4.5_0005161g0140' => 'nta', 'Nitab4.5_0007375g0050' => 'nta', 'Nitab4.5_0011786g0010' => 'nta', 'Nn3g16429' => 'nnu', 'Nn3g16430' => 'nnu', 'Nn3g16431' => 'nnu', 'Nn4g22282' => 'nnu', 'Nn4g22283' => 'nnu', 'Nn4g22284' => 'nnu', 'Nn7g37658' => 'nnu', 'Nn8g39074' => 'nnu', 'Oeu005117.1' => 'oeu', 'Oeu006520.1' => 'oeu', 'Oeu011968.1' => 'oeu', 'Oeu041661.1' => 'oeu', 'Oeu062528.1' => 'oeu', 'Os01g0101900' => 'osa', 'Os01g0849500' => 'osa', 'Os01g0923200' => 'osa', 'Os02g0508100' => 'osa', 'Os02g0508801' => 'osa', 'Os02g0509500' => 'osa', 'Os04g0387600' => 'osa', 'Os04g0387900' => 'osa', 'Os05g0103300' => 'osa', 'Os05g0103400' => 'osa', 'Os07g0298400' => 'osa', 'Os11g0496500' => 'osa', 'Peaxi162Scf00089g00130' => 'pax', 'Peaxi162Scf00128g01419' => 'pax', 'Peaxi162Scf00331g00314' => 'pax', 'Peaxi162Scf00420g00513' => 'pax', 'Peaxi162Scf00420g00563' => 'pax', 'Peaxi162Scf00420g00571' => 'pax', 'Peaxi162Scf00518g00024' => 'pax', 'Peaxi162Scf00700g00016' => 'pax', 'Peaxi162Scf00700g00040' => 'pax', 'PGR083G0028' => 'pgr', 'PGR102G2266' => 'pgr', 'PGR119G1360' => 'pgr', 'PGR142G1701' => 'pgr', 'PGR142G3212' => 'pgr', 'PGSC0003DMG400015204' => 'stu', 'PGSC0003DMG400015303' => 'stu', 'PGSC0003DMG400020279' => 'stu', 'PGSC0003DMG400021907' => 'stu', 'PGSC0003DMG400027109' => 'stu', 'PGSC0003DMG400030200' => 'stu', 'PGSC0003DMG400030201' => 'stu', 'Phvul.001G092100' => 'pvu', 'Phvul.001G092200' => 'pvu', 'Phvul.001G092300' => 'pvu', 'Phvul.001G092400' => 'pvu', 'Phvul.001G092500' => 'pvu', 'Phvul.001G263100' => 'pvu', 'Phvul.001G263200' => 'pvu', 'Phvul.002G286200' => 'pvu', 'Phvul.L003046' => 'pvu', 'Phvul.L003246' => 'pvu', 'Potri.001G057900' => 'ptr', 'Potri.001G058001' => 'ptr', 'Potri.001G328701' => 'ptr', 'Potri.001G328800' => 'ptr', 'Potri.001G329000' => 'ptr', 'Potri.003G170400' => 'ptr', 'Potri.003G170500' => 'ptr', 'Potri.012G100100' => 'ptr', 'Potri.015G098200' => 'ptr', 'Potri.015G098300' => 'ptr', 'Potri.017G064301' => 'ptr', 'Potri.017G064400' => 'ptr', 'Potri.017G064500' => 'ptr', 'Potri.017G064972' => 'ptr', 'Potri.017G065444' => 'ptr', 'Pp3c11_9310' => 'ppa', 'Pp3c1_3610' => 'ppa', 'Pp3c7_18300' => 'ppa', 'Prupe.1G223800' => 'ppe', 'Prupe.1G223900' => 'ppe', 'Prupe.3G307400' => 'ppe', 'Prupe.3G307500' => 'ppe', 'Prupe.3G307600' => 'ppe', 'Prupe.3G307700' => 'ppe', 'Prupe.5G149500' => 'ppe', 'Prupe.5G149600' => 'ppe', 'Psat7g036560' => 'psa', 'PSO017G0955' => 'pso', 'PSO017G1788' => 'pso', 'PSO017G1949' => 'pso', 'PSO017G2698' => 'pso', 'PSO017G5684' => 'pso', 'PSO017G5961' => 'pso', 'PSO017G6087' => 'pso', 'PSO017G6400' => 'pso', 'PSO478G2231' => 'pso', 'PSO478G2849' => 'pso', 'PSO671G0001' => 'pso', 'PSO671G0002' => 'pso', 'PSO827G0001' => 'pso', 'PSO827G0002' => 'pso', 'QL02p071134' => 'qlo', 'QL02p071139' => 'qlo', 'QL02p071142' => 'qlo', 'QL02p071152' => 'qlo', 'QL03p052147' => 'qlo', 'QL03p052184' => 'qlo', 'QL10p002614' => 'qlo', 'RcHm_v2.0_Chr2g0175791' => 'rch', 'RcHm_v2.0_Chr2g0175801' => 'rch', 'RcHm_v2.0_Chr2g0175811' => 'rch', 'RcHm_v2.0_Chr2g0175821' => 'rch', 'RcHm_v2.0_Chr4g0429951' => 'rch', 'RcHm_v2.0_Chr7g0189891' => 'rch', 'RcHm_v2.0_Chr7g0189911' => 'rch', 'Rhsim08G0042200' => 'rsi', 'Rhsim08G0191400' => 'rsi', 'Sabra01G0041800' => 'sbr', 'Sabra03G0124600' => 'sbr', 'Sabra17G0058200' => 'sbr', 'SalBow1G1420' => 'sbo', 'SalBow1G3332' => 'sbo', 'SalBow4G0410' => 'sbo', 'SalBow4G0543' => 'sbo', 'SalBow4G1374' => 'sbo', 'SalBow4G2459' => 'sbo', 'SalBow4G2657' => 'sbo', 'SalBow7G2973' => 'sbo', 'SalBow8G2314' => 'sbo', 'Sc03g0006390' => 'sci', 'Sc03g0006400' => 'sci', 'Sc03g0006410' => 'sci', 'Sc03g0006440' => 'sci', 'Sc04g0000500' => 'sci', 'Sc04g0010240' => 'sci', 'Sc10g0010500' => 'sci', 'Sc11g0000390' => 'sci', 'Sc23g0000980' => 'sci', 'Sed0002081' => 'sed', 'Sed0002404' => 'sed', 'Sed0002428' => 'sed', 'Sed0007051' => 'sed', 'Sed0009194' => 'sed', 'Sed0016473' => 'sed', 'Sed0024721' => 'sed', 'Sed0024888' => 'sed', 'Sed0026049' => 'sed', 'SEGI_14240' => 'sgi', 'SEGI_23620' => 'sgi', 'SEGI_31980' => 'sgi', 'SGA_v2.0_scaffold47G17601' => 'sas', 'SGA_v2.0_scaffold47G17602' => 'sas', 'SHI04041' => 'shi', 'SHI04042' => 'shi', 'Solyc02g068160.1' => 'sly', 'Solyc02g094210.1' => 'sly', 'Solyc02g094220.2' => 'sly', 'Solyc03g019700.1' => 'sly', 'Solyc05g015700.1' => 'sly', 'Solyc06g072060.1' => 'sly', 'Solyc06g072070.2' => 'sly', 'Sopen02g038840' => 'spe', 'Sopen02g038850' => 'spe', 'Sopen03g029920' => 'spe', 'Sopen05g011150' => 'spe', 'Sopen06g028350' => 'spe', 'Sp2g16160' => 'spa', 'Sp2g16170' => 'spa', 'Sp2g26580' => 'spa', 'Sp3g00160' => 'spa', 'Sp5g13350' => 'spa', 'Sp6g12730' => 'spa', 'Sp6g34560' => 'spa', 'Sp7g00940' => 'spa', 'Sp7g00950' => 'spa', 'TAR371G0298' => 'tar', 'TAR371G1133' => 'tar', 'TAR374G0837' => 'tar', 'TAR622G1328' => 'tar', 'THA.LOC104805325' => 'tha', 'THA.LOC104807141' => 'tha', 'THA.LOC104818180' => 'tha', 'THA.LOC104821134' => 'tha', 'THA.LOC104822418' => 'tha', 'THA.LOC104822794' => 'tha', 'THA.LOC109116194' => 'tha', 'THA.LOC109116225' => 'tha', 'THA.LOC109116336' => 'tha', 'THA.LOC109116343' => 'tha', 'THA.LOC109116999' => 'tha', 'THA.LOC109117188' => 'tha', 'Thecc.02G204800' => 'tca', 'Thecc.02G204900' => 'tca', 'Thecc.03G130800' => 'tca', 'Thecc.03G130900' => 'tca', 'Thecc.04G038600' => 'tca', 'Thecc.04G038700' => 'tca', 'Thecc.04G039000' => 'tca', 'Thecc.04G039100' => 'tca', 'Thhalv10005242m.g' => 'esa', 'Thhalv10005243m.g' => 'esa', 'Thhalv10005506m.g' => 'esa', 'Thhalv10010885m.g' => 'esa', 'Thhalv10015204m.g' => 'esa', 'Thhalv10015314m.g' => 'esa', 'Thhalv10015879m.g' => 'esa', 'Thhalv10021883m.g' => 'esa', 'Thhalv10028016m.g' => 'esa', 'Thhalv10028017m.g' => 'esa', 'Thhalv10028018m.g' => 'esa', 'TPR.G12820' => 'tpr', 'TPR.G16607' => 'tpr', 'TPR.G17094' => 'tpr', 'TPR.G17107' => 'tpr', 'TPR.G17771' => 'tpr', 'TPR.G17773' => 'tpr', 'TPR.G20595' => 'tpr', 'TPR.G24772' => 'tpr', 'TPR.G28560' => 'tpr', 'TPR.G28562' => 'tpr', 'TPR.G28563' => 'tpr', 'TPR.G28565' => 'tpr', 'TPR.G29070' => 'tpr', 'TPR.G31616' => 'tpr', 'TWI18G0942' => 'twi', 'TWI23G0905' => 'twi', 'TWI32G0066' => 'twi', 'TWI32G0805' => 'twi', 'TWI32G1081' => 'twi', 'TWI34G0503' => 'twi', 'TWI34G1699' => 'twi', 'TWI36G0600' => 'twi', 'TWI39G0938' => 'twi', 'TWI60G0874' => 'twi', 'TWI75G0038' => 'twi', 'unitig_0.g1927' => 'ugi', 'vmacro05967' => 'vma', 'Zm00001eb003940' => 'zma', 'Zm00001eb075930' => 'zma', 'Zm00001eb085440' => 'zma', 'Zm00001eb127050' => 'zma', 'Zm00001eb127070' => 'zma', 'Zm00001eb147930' => 'zma', 'Zm00001eb169420' => 'zma', 'Zm00001eb241780' => 'zma', 'Zm00001eb241790' => 'zma', 'Zm00001eb267550' => 'zma', 'Zm00001eb282270' => 'zma', 'Zm00001eb305550' => 'zma' ) $gf_id = 'HOM05D000704' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000704' ) $data_identifier = 'HOM05D000704' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'ach' => (int) 2, 'amhyb' => (int) 2, 'aly' => (int) 11, 'aox' => (int) 1, 'arhy' => (int) 1, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 44, 'bol' => (int) 17, 'bra' => (int) 20, 'can' => (int) 16, 'cansat' => (int) 10, 'chi' => (int) 11, 'cru' => (int) 12, 'ccan' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 10, 'cil' => (int) 14, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 8, 'din' => (int) 2, 'dzi' => (int) 17, 'eca' => (int) 1, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 21, 'fve' => (int) 2, 'gma' => (int) 23, 'ghi' => (int) 40, 'gra' => (int) 19, 'vvi' => (int) 5, 'han' => (int) 17, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 12, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 15, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 1, 'pso' => (int) 14, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 3, 'sbo' => (int) 9, 'sci' => (int) 9, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 2, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 4, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 11, 'tpr' => (int) 14, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 1, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305550' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1